Entry to transcription groups (1): software installation and entry to transcription

Entry to transcription groups (1): software installation and entry to transcription
HISAT

Wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip
Unzip hisat2-2.1.0-source.zip
Cd hisat2-2.1.0
Make # install g ++ and gcc before using sudo apt install
Rm-f *. h *. cpp

Samtools

Wget https://github.com/samtools/samtools/releases/download/1.5/samtools-1.5.tar.bz2
Tar xvfj samtools-1.5.tar.bz2
Cd samtools-1.5
./Configure # install the system-dependent Module Based on configure detection until no error is reported.
Make
Sudo make install

HTSeq

# Install Dependencies
Sudo apt-get install python-pip
Pip install -- upgrade pip
Sudo apt-get install build-essential python2.7-dev python-numpy python-matplotlib python-pysam python-htseq
Pip install HTSeq