[Samtools] Text viewing syntax, browsing Snp/indel sites

Santools can be used as a text viewing tool to view the results of a comparison file, below to do a brief introduction:

1. Obtain a SAM Bwa file by using the ratio pair, or you can convert the Fastq file to a Bam/sam file;

2. Convert Sam files to BAM files, Samtools view-bs seq.sam > Seq.bam

3. Sort the BAM files, samtools sort Seq.bam-o Seq.sorted.bam

4. Index,samtools index Seq.sorted.bam for BAM files

5. View the comparison result file, Samtools Tview seq.sorted.bam Ref.fasta

Note:

All help instructions can be found on the official website:

Http://www.htslib.org/doc/samtools.html

Https://github.com/samtools/hts-specs

[Samtools] Text viewing syntax, browsing Snp/indel sites