Genome Music Installation

System: Ubuntu 15.04
Install all the way under root authority

First install the software Samtools, must be the samtools-0.1.19 version
Tar jxf samtools-0.1.19.tar.bz2
CD samtools-0.1.19
Make
Export samdir= $PWD
sudo mv samtools/usr/local/bin/
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#安装相关依赖包

sudo apt-get install curl gcc make perl git libbam-dev bedtools r-base-core libexpat1-dev Zlib1g-dev Tabix
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#安装 Joinx

git clone--recursive https://github.com/genome/joinx.git
sudo apt-get install build-essential cmake libbz2-dev Libgtest-dev
CD Joinx
mkdir Build
CD Build
CMake. -dcmake_build_type=release
Make Deps
Make
sudo make install

# If CMake error occurs at Cmakelists.txt:17 TestHelper, etc.
#执行下列命令:
#git submodule Update--init

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#安装calc-ROI-COVG
git clone https://github.com/ding-lab/calc-roi-covg.git

CD CALC-ROI-COVG; Make

sudo mv calcroicovg/usr/local/bin/

Install some R packages that enable parallelization across cores:

Curl-lo "http://cran.r-project.org/src/contrib/{multicore_0.2.tar.gz,iterators_1.0.7.tar.gz,foreach_1.4.2. TAR.GZ,DOMC_1.3.3.TAR.GZ} "
#multicore_0.2.tar.gz the page package does not exist and needs to be downloaded from another Web page
#iterators_1.0.8.tar.gz,foreach_1.4.3.tar.gz,domc_1.3.4.tar.gz

sudo R CMD INSTALL multicore_0.2.tar.gz iterators_1.0.8.tar.gz foreach_1.4.3.tar.gz domc_1.3.4.tar.gz

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#安装perl依赖包

Curl-l http://cpanmin.us | sudo perl---self-upgrade

Install Some prerequisite Perl modules:

sudo ' which cpanm '-n text::csv_xs Statistics::D istributions Statistics::D escriptive PDL pdl::stats module::build Regexp :: Common time::hires ipc::cmd lwp::simple list::moreutils set::scalar bit::vector UR

sudo ' which cpanm '-N http://apt.genome.wustl.edu/ubuntu/pool/main/g/genome/genome_0.80.1-3.tar.gz

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#Install MuSiC:

sudo ' which cpanm '-N http://apt.genome.wustl.edu/ubuntu/pool/main/g/genome-music/genome-music_0.4.1-1.tar.gz

#安装完成, Test command

Genome Music--help

Genome Music Installation