Installing Bioinformatics Software-biopython

In fact, a lot of things loaded many times, but every time to go through the document, often fell into the front of the pit ... So here to re-write a guide, in case of the next time to install and forget (I do not want to pretend AH no flag)

1. Installing Biopython

1.1 Because Biopython is currently supporting Python2, I'm going to set Python to 2.

1.2 Installing NumPy (http://www.numpy.org/)

NumPy is the fundamental package for scientific computing with Python. It contains among other things:

• A powerful N-dimensional Array object
• Sophisticated (broadcasting) functions
• Tools for integrating C + + and Fortran code
• Useful linear algebra, Fourier transform, and random number capabilities

Download, unzip, install:

CD numpy-1.11.2

Okay, here's the problem. Need 1.3 now

1.3 Installing Setuptools

sudo apt-get install Python-setuptools

sudo apt-get install Python-pip (Pip is handy)

1.4 But I will make an error

Runtimeerror:running cythonize failed!

So... Swap this command: sudo apt-get install Python-numpy

Displays the installation success.

1.5 Installing Biopython

$ sudo easy_install-f Http://biopython.org/DIST/biopython

1.6 Inspection

Installing Bioinformatics Software-biopython