-All features were running on sitecollection level and at site level
But here is the solution, I do not why it worked but it did work.
Although you can activate and deactivate Office Sharepoint Server Enterprise site collection features, Office Sharepoint Server Enterprise site features through site collection features and site features.
But give it a try through stsadm solution:
Stsadm-O deactivatefeature-filename ipfssitefeatures \ feature. XML-force-URL % site_collection_url %
Stsadm-O deactivatefeature-filename ipfswebfeatures \ feature. XML-force-URL % site_collection_url %
Stsadm. exe-O activatefeature-filename ipfssitefeatures \ feature. XML-URL % sitecollection_url %-Force
Stsadm. exe-O activatefeature-filename ipfswebfeatures \ feature. XML-URL % sitecollection_url %-Force
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