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Hierarchical Clustering Principle:
Well. Sort the diagram. Divide and conquer. Yes, unlike prototype clustering and density clustering, hierarchical clustering attempts to partition sample datasets on different "levels",
Python clustering algorithm-aggregated hierarchical clustering instance analysis, python Clustering
This example describes the clustering of Python clustering algorithms. We will share
. second, condensing hierarchical clustering
Hierarchical clustering can be divided into condensed (agglomerative) hierarchical clustering and split (divsive)
This article mainly introduces the principle and specific usage skills of the Python Clustering Algorithm for clustering hierarchical clustering, which has some reference value, for more information about Python clustering, see the following
excessive merging, the defined exit condition is that the cluster of 90% is merged, that is, the current cluster number is the 10% of the initial cluster : The implementation code is as follows:[Python]View PlainCopy
# Scoding=utf-8
# Agglomerative Hierarchical Clustering (AHC)
Import Pylab as Pl
From operator Import Itemgetter
From collections Impor
Label: Cluster analysis groups data Objects (clusters) based only on the information found in the data describing the objects and their relationships . The goal is that objects within a group are similar to each other, and objects in different groups are different. The greater the similarity within the group, the greater the difference between groups, the better the clustering. The different types of clustering
Hierarchical clustering algorithm is a widely used algorithm, small series to do comparative experiments, to achieve one version, in order to verify the experimental results, combined with the distance between the provincial capitals, the province to see how the effect of clustering. All this article from 3 parts to introduce, first introduced the
ExampleGenerating hierarchical cluster trees from sample dataThis example shows the use of sample data to generate hierarchical clusters, and a 3-D scatter plot to present the cluster.Produces the sample data matrix, where the random number is generated by the standard uniform distribution (U (0,1)).RNG (' Default '); % for ReproducibiltyX = [Gallery (' Uniformda
Example
Compare Cluster Assignments to ClustersImport the sample data.Load FisheririsFrom the Anderson Iris Floral Data set, the ward linkage calculates four clusters and ignores the type information.Z = Linkage (MEAs, ' Ward ', ' Euclidean ');c = Cluster (Z, ' Maxclust ', 4);The relationship between cluster results and three species was observed.Crosstab (c,species)Print the first 5 lines of Z.firstfive = Z (1:5,:)Generates a system tree graph
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