gene meltser

1264: [AHOI2006] gene matches match time limit:10 Sec Memory limit:162 MBsubmit:1255 solved:835[Submit] [Status] [Discuss] Description gene matching (match) Kaka dreamed last night that he and cocoa had come to another planet, and that the DNA sequence of the creatures on the planet was made up of countless bases (only 4 on earth), and even more strangely, each of the bases that made up the DNA seq

The data used for the following analysis can be found here ( "Href =" http://dl.getdropbox.com/u/308058/blog/raw_data_3_replicates.txt "> http://dl.getdropbox.com/u/308058/blog/raw_data_3_replicates.txt) download, the data comes from a study on Gene Transfer of butterflies, 20 sample butterfly individuals, 10 of which are local inherent (old ), the other 10 are newly migrated individuals (new), old and new individuals are randomly paired and marked

Words:Polymerase polymerase [' p?l?m?re?z; p? ' L?M?RE?Z]An enzyme that catalyzes (catalysis) the formation of new DNA and RNA from an existing strand of DNA or RNAcovalently of the Total priceThe structure of hepatitis B virusThe genome organisation of HBV. The genes overlap.Hepatitis B virus replicationHepatitis B virus (HBV) belongs to the Hepatic DNA virus section (Hepadnaviridae), the gene leader is about 3.2KB , is a partial double-strand cyclic

A gene string can be represented by an 8-character long string, with choices from "A" , "C" , "G" , "T" .Suppose we need to investigate on a mutation (mutation from ' start ' to ' end '), where one mutation is defined as one sin GLE character changed in the gene string.For example, "AACCGGTT" is "AACCGGTA" 1 mutation.Also, there is a given gene "bank", which reco

Next article: using R and biocondufor gene chip data analysis (3): computing Median Normalization is translated from normalization. The purpose of normalization is to make measurements under various/group measurements or under various experimental conditions can be compared with each other to eliminate non-experimental differences between measurements. Non-experimental differences may come from sample preparation, sample, hybridization, and signal p

similarity of two genes is defined as the one with the greatest similarity among all correspondence methods.Input/output formatInput format:A total of two lines. Each line is first an integer representing the length of the gene, followed by a sequence of genes, with only a,c,g,t four letters in the sequence. The length of the 1Output format:Only one row, that is, the similarity of the input genes.Input/Output sampleInput Sample # #:7 AGTGATG5 GttagSa

Test instructionsThe human genome consists of a, C, G, T.There is a 5*5 gene table. Each cell has a value, called similarity. Example: A-c:-3. This means that if a and C are paired, then the similarity between the two IS-3 "p.s.:-and-no similarity, i.e.-and-cannot be paired"Now give two gene fragments. (length is not necessarily equal)Now you have to insert several-(blank) genes into the two-

Gene Assembly Time limit: 2 Seconds Memory Limit: 65536 KB Statement of the problem With the large amount of genomic DNA sequence data being made available, it's becoming more important to find genes (p Arts of the genomic DNA which is responsible for the synthesis of proteins) in these sequences. It is known this for eukaryotes (in contrast to prokaryotes) The process is more complicated, because of the presen

The process of individualized diagnosis mainly involves the application of molecular diagnosis technology, big data and cloud computing, and the relevant diagnosis results are obtained through the collection and detection of individual patient-related samples and the data of related diseases in the database. In the individualized treatment stage, the "volume-genre drug" can be achieved according to the diagnostic results.Northeast Securities says big data and cloud computing will play a big role

Today, I saw a message like a scientific report and an advertisement on the Southern Metropolis Daily: In 96 years, the Shaanxi branch of the Chinese Emy of Sciences has developed a gene peptide that breaks the DNA of cancer cells. I was wondering: I rely on it. Our country has a person with such Nb. How can we not win a Nobel Medical Prize if such a Nb-medicine can solve cancer problems? Is that unfair? Then I came back to Google at one hundred

: At the beginning, let's look at the reasons for mistakes made by others in discuss: matrix CC error, DP equation error, array write error ..... right one by one. After reading it twice from start to end, I found that the initial DP condition was wrong. In this way, it would be too difficult to pass the example !! It seems that the robustness of self-built Edge Data Testing programs will be enhanced in the future !! [BTW] it seems that the formal problem-solving report starts from this articl

Simple wide search. The 4 binary corresponds to the 10 binary number to represent these states, a total of only (4^12) states.#include #include#include#include#include#includeusing namespacestd;Const intMAXN = the; Mapint,int>m;structp{intState ; inttot;}; QueueQ;CharS1[MAXN], S2[MAXN];intTMP1[MAXN], R1, TMP2[MAXN], R2;intA, B;intN;intB[MAXN];intFCharSign ) { if(Sign = ='A')return 0; if(Sign = ='T')return 1; if(Sign = ='G')return 2; if(Sign = ='C')return 3;}voidinit () { while(!Q.empty ())

Title Link: http://acm.zju.edu.cn/onlinejudge/showProblem.do?problemId=76Problem Solving Report:1. Arrangement of similar activities.2, the output format should be noted.#include #includestring.h>#includeusing namespacestd;structgene{intS///starting intF///End intIndex///numbering} a[1005];BOOLb[1005];BOOLcmpConstGenea,Constgeneb) { if(a.fB.f)return true; Else return false;}intMain () {intN; while(SCANF ("%d",N) {memset (b) ,false,sizeof(b)); for(intI=0; i) {scanf ("%d%d",a[i].s,a[i].

Make a genome commentUse Augustus Training first, then use makerUrl:http://bioinf.uni-greifswald.de/augustus/can be analyzed onlinecan also be local.Online Training Website:Http://bioinf.uni-greifswald.de/webaugustus/training/createYou had to give a species name (no spaces!). ), and a genome file!Head requirements for reference genomes and cDNA fasta files: No whitespaces in the headers No special characters in the headers (e.g. !#@|;) Make the headers as short as possible L

Algorithm Analysis:/*Analysis of this problem shows that the deformation of the oldest sequence (LCS) problem.Suppose that two sub-sequences are X, Y, respectively;Xi= (X1,X2...XI), yj= (y1,y2. YJ) is the first i,j sub-sequence of two sub-sequences, respectivelyTo find the oldest sequence;1, when Xi=yj, dp[i][j]=dp[i-1][j-1]+12. When xi! =yj, then Dp[i][j]=max (Dp[i-1][j],dp[i][j-1]).For the subject, it's variant LCS.Set DP[I][J] to take S1 I-character, S2 the first J-character of the maximum sc

[5*maxn],e[5*maxn],f[5*MAXN];Ten //F[i] represents the longest common substring at the end of A[i], so you can avoid discussing cross - One intpos[maxn][6]; A intans=0; - - intLowbit (intx) the { - return(x (-x)); - } - + intQueryintx) - { + intret=0;//the initial value must be set to 0 instead of-1 . A while(x>0) Ret=max (Ret,e[x]), x-=lowbit (x); at returnret; - } - - voidUpdateintXintDelta) - { - while(x5*n) E[x]=max (E[x],delta), x+=lowbit (x); in } - to voidInit (

Magenta is a computational tool that uses genome-wide genetic data to calculate pre-defined enrichment levels involving biological processes or functional genomes in genetic correlation. The purpose of the development is to analyze the genotype is not a ready-made data set, such as a large genome-wide association meta-analysis. In the following two cases, it is possible to use: 1, to test a particular hypothesis, and 2 to make a hypothesis by detecting a series of known biological genomes (pathw

Gene spacer: An intergenic regions (IGR) is a stretch of DNA sequences located between genes. Intergenic regions is a subset of noncoding DNA. Occasionally some intergenic DNA acts to control genes nearby and most of it have no currently known function. It's one of the DNA sequences sometimes referred to as junk DNA, though it's only one phenomenon labeled such and in SCI Entific Studies today, the term was less used. Recently DNA fragments in interge

Information gene Measurement Model of B2B online payment evolutionary system Abstract: In view of the limitations of the existing B2B online payment system and the lack of effective cooperative operation mechanism, based on the sequence Parameter principle of the coroutine theory, The discovery of participant information genes is a micro-order parameter that determines the macroscopic order of the B2B online payment evolutionary system, and two-dimens

Serie A: The two ends of the gene sequence match, and four different nucleotide tcga have different score matches. For example T-G score is-2, it can also be added to a space, cavity lattice and also has a corresponding nucleotide matching score, to find the maximum scoreAnalysis:The number and position of the difficult lattice in the air is uncertainTwo-dimensional dp,dp[i][j] represents the maximum fraction of the first I segment of sequence A and t