Installation of Linux-ubuntu under FASTQC

1.FASTQC is running in a Java environment, so before installing FASTQC, there should be a Java Runtime Environment (JRE) under Linux. And the Java version should be at 1.8.0 version

2.java installation: Download the latest version of Java, and note that you want to download the version with the JRE.

3. Decompression: TAR-ZXVF java.tar.gz

4.CD java-1.8.0

5. Enter the java-1.8.0 directory, you can see there is a folder called JRE, the JRE contains Bin and Lib subfolders, the two paths are added to the. BASHRC environment variable file. You can run the JRE environment under any path.

6. Download the corresponding FASTQC compression package on the following website: HTTP://WWW.BIOINFORMATICS.BABRAHAM.AC.UK/PROJECTS/DOWNLOAD.HTML#FASTQC

7. Decompression: Unzip Fastqc.zip

8. Decompression has become a file named: FASTQC

9.cd FASTQC into the Fastqc file, you can see inside there is a FASTQC executable file,

10.chmod 755 FASTQC (Change permission settings for FASTQC)

/FASTQC can run the FASTQC program. If you want to run the FASTQC program in any directory, you need to add the path to the FASTQC program to the environment variable. BASHRC.

Installation of Linux-ubuntu under FASTQC