BioInfoServOS: Bioinformatics software under Ubuntu

The saying goes: "to do good deeds, you must first sharpen your tools ". Most computer users in China use Windows operating systems, and even scientific research institutions are inevitable. There are many reasons for such a situation. For a Bio-technician, a major reason that Win is inseparable from the professional software operating platform. In fact, many scientific research software comes with * nix versions first, or some of them only have those versions. I have been suffering from using DANMAN on Ubuntu (in Ubuntu8.04

The saying goes: "to do good deeds, you must first sharpen your tools ". Most computer users in China use Windows operating systems, and even scientific research institutions are inevitable. There are many reasons for such a situation. For a Bio-technician, a major reason that Win is inseparable from the professional software operating platform. In fact, many scientific research software comes with * nix versions first, or some of them only have those versions. I have been suffering from using DANMAN on Ubuntu (I had Wine in Ubuntu 8.04, but it was useless in Ubuntu 9.04 ). In fact, there are many such software in the Ubuntu source.

Command:

Yuanjin @ yuanjin-laptop :~ $ Apt-cache DNA> DNA .txt

// The keywords of the software are used to search for the key words, and the returned result is output to the final result. txt.

Yuanjin @ yuanjin-laptop :~ $ Gedit DNA .txt

// Use geditto open mongodn.txt and you can find the software as needed.

PS: Some of the returned results may have nothing to do with the DNA, but there are more than what is found in the new independent software manager.

Appendix-filtered search results (in this line, it is estimated that these foreign languages are not a problem and you are interested in reading them. We recommend Ugene, an integrated software toolkit with relatively powerful functions, to visit the home page ).

Boxshade-Pretty-printing of multiple sequence alignments
Dialign-Segment-based multiple sequence alignment
Dialign-tx-Segment-based multiple sequence alignment
Exonerate-generic tool for pairwise sequence comparison
Fastdnaml-Tool for construction of phylogenetic trees of DNA sequences
Last-align-genome-scale comparison of biological sequences
Maq-maps short fixed-length polymorphic DNA sequence reads to reference sequences
Melting-computing the melting temperature of nucleic acid duplex
Mummer-Efficient sequence alignment of full genomes
CLR-epcr-Tool to test a DNA sequence for the presence of sequence tagged sites
Plink-whole-genome association analysis toolset
Primer3-Tool to design flanking oligo nucleus otides for DNA amplification
Sibsim4-align expressed RNA sequences on a DNA template
Sigma-align-Simple greedy multiple alignment of non-coding DNA sequences
Sim4-tool for aligning cDNA and genomic DNA
T-coffee-Multiple Sequence Alignment
Tigr-glimmer-Gene detection in archea and bacteria
Ugene-integrated bioinformatics toolkit
Ugene-data-required data for UGENE-integrated bioinformatics toolkit
Wise-comparison of biopolymers, commonly DNA and protein sequences
Wise-doc-documentation for the wise package
Clustalw-global multiple nucleus otide or peptide sequence alignment
Molphy-Program Package for MOLecular PHYlogenetics