rna interface

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Chapter III RNA sequencing

RNA sequencing (RNA sequencing, referred to as Rna-seq, also known as the whole transcription group Bird marksmanship sequencing Whole transcriptome shotgun sequencing, abbreviated wtss), is a method of studying transcriptome based on second-generation sequencing techniques that can quickly obtain the type and number of RNA

RRNA----ribosomal RNA

Https://zh.wikipedia.org/wiki/%E6%A0%B8%E7%B3%96%E9%AB%94RNAribosomal RNA(Ribosomal RNA, RRNA) is one of the main RNA in biological cells and is a catalytic enzyme, but it does not function when it exists alone. The function can only be performed when a ribosome (a membrane-free cell) is formed in conjunction with a variety of ribosome proteins. The formation of

The shearing process of bioinformatics--rna

exon (exon expressed region) is part of the eukaryotic gene, which is preserved after splicing (splicing) and can be expressed as a protein in the process of protein biosynthesis.Exon is the last gene sequence that appears in mature RNA, also known as the expression sequence. A nucleotide sequence that exists both in the original transcription product and in the mature RNA molecule. The term exon also refer

Authoritative release: Long-chain non-coded RNA naming conventions

Transferred from: http://blog.sina.com.cn/s/blog_8088f3700101pab7.html authoritative release: Long-chain non-coded RNA naming conventionsThe Hugo Gene Naming Commission (HGNC) is the only officially authorized institution for the development of the human genome naming standard. HGNC's database contains 38,000 gene names, most of which are encoded protein genes, but HGNC also named more than 8,500 human non-coding genes and pseudo-non-coding genes, and

The process of a rna-seq--know live turn

needs to be removed.Indicates the content of the sequence of segments measured during sequencing, the horizontal axis is 1-150bp, and the longitudinal axes are percentages. For some reason, most of the measurements are adaptor.This is mainly a measure of the level of the building, the library usually has 6-8 rounds of PCR, but sometimes there is a phenomenon of p, when the duplication is too high, the need to go to the DUP. But in Rna-seq, there is u

R script for automatic processing of high-throughput sequencing (RNA-SEQ) data

--file=~/mrna_workflow. R >./nohup.log## nohup/data02/software/r/bin/r CMD BATCH ~/mrna_workflow. R >/nohup.log##-------Those lines should be changed accordingly-----------------------------# # under normal circumstances, You need to change the following lines as needed: Output_folder and output_folder;## directory: The absolute path representing a directory ending with "/", unless otherwise stated! # # Foler: Represents the file name of a folder, ending with "/", unless otherwise stated! # # Pa

Single cell rna-seq denoising using a deep count autoencoder

, and D is the activation function matrix derived from the decoding layer.The loss function is likelihood of zero-inflated negative binomial distribution:According to the parameters obtained from the series of equations, the parameters of the loss function are estimated, and the estimation process is used in the ZINB distribution, where m represents the mean matrix with size factor, the formula is as follows:At the same time, if you have different DP rate weights, you need to estimate it differe

Python text processing to convert RNA to protein

defTranslate_rna (sequence):#Password sub-tableCodontable = { 'AUA':'I','AUC':'I','AUU':'I',' the':'M', 'ACA':'T','ACC':'T','ACG':'T','ACU':'T', 'AAC':'N','AAU':'N','AAA':'K','AAG':'K', 'AGC':'S','AGU':'S','AGA':'R','AGG':'R', 'CUA':'L','CUC':'L','CUG':'L','Cuu':'L', 'CCA':'P','CCC':'P','CCG':'P','CCU':'P', 'CAC':'H','CAU':'H','CAA':'Q','CAG':'Q', 'CGA':'R','CGC':'R','CGG':'R','CGU':'R', 'GUA':'V','GUC':'V','GUG':'V','GUU':'V',

Rust:codewars DNA to RNA conversion_rust

AlgorithmDna_to_rna ("Gcat")//=> "Gcau"The input character T is converted to u, or vice versa. This question is very easy, but put here, mainly want to hint, rust has two kinds of solution of the pattern. Non-replace mode:1, fn Dna_to_rna (DNA: &str)

Comparable interface, set interface, map interface, list interface and generics

Comparable interfaceClasses that implement the comparable interface, which can be compared to size.There is only one method in the comparable interfacepublic int CompareTo (object obj);This method: Returns 0 indicating this = = objReturns a positive number indicating this > objReturns a negative number indicating this > objClasses that implement the comparable interface determine how objects are sorted by t

The base class explicitly inherits the interface. When the class inherits the base class, it inherits the same interface, leading to confusion in interface methods (disadvantages of the explicit inheritance interface)

The base class baseoutput explicitly inherits an interface ioutput, and the class trackoutput inherits baseoutput, and also inherits the ioutput interface. Assume that ioutput has a method output, so there are two output methods in trackoutput, one source is the base class baseoutput and the other source is the interface ioutput. This leads to confusion. What sho

Interface Test--the next chapter, with the/note/readnotes interface as an example of how to do the interface

Interface Test--preface, How does the interface come about?Interface test--Medium, a Notepad interface via DjangoInterface Test--the next chapter, with the/note/readnotes interface as an example of how to do the interfaceInterface testing--Tools for automating

Java8 function Interface/LAMBDA expression/interface default method/interface static method/interface conflict method override/LAMBDA expression specify generic type, etc.

One: Functional interface1. The concept of a functional interface is that this interface must have only one abstract method, which can be displayed by @functionalinterface (similar to @override), but an interface with no such annotations but only one abstract method is also a functional interface ; (Interfaces also hav

List interface, Set interface, Map interface, list interface setmap

List interface, Set interface, Map interface, list interface setmap1. The List and Set interfaces inherit from the Collection interface, while Map is not the inherited Collection interface. Map does not inherit the Collection

The base class explicitly inherits the interface, which inherits the same interface when the class inherits the base class, causing the interface method to be confusing (the disadvantage of explicitly inheriting an interface)

The base class Baseoutput explicitly inherits an interface Ioutput, after which the class Trackoutput inherits Baseoutput, and the Ioutput interface is inherited at the same time. Suppose Ioutput has a method output, so there are two output methods in Trackoutput, one from the base class Baseoutput, and one originating from the interface ioutput. This has led to

Java collection framework, collection interface, set interface, list interface, map interface, has been commonly used in their implementation class, simple JDK source code analysis of the underlying implementation

(i) Collection framework:  The Java language designer has made some specifications (interfaces) and implementations (classes that implement interfaces) for commonly used data structures and algorithms. All abstract data structures and operations (algorithms) are collectively referred to as the collection framework.Programmers in the application, do not have to consider the data structure and algorithm implementation details, only need to create some objects with these classes, and then directly

Test the WebService Interface (SOAP) with the HTTP interface using the HttpClient tool class, test the WebService interface here, and test the HTTP interface implementation in a similar way

code returned by the serverint statuscode = Response.getstatusline (). Getstatuscode ();7. Get the return entity of the serverhttpentity entity = response.getentity ();8. Convert the entity returned by the server into a string (request response result)String responsemsg = entityutils.tostring (entity);System.out.println ("interface:" + data.get ("Msgtype") + ": Returns the status code with the response result:" + statuscode + ":" + responsemsg);}}Tes

Implement multi-interface 1 to manually add interfaces. 2. Interface upgrade: The imathe interface adds new functions and upgrades them to imathe2.

COM Component Design and Application (8)Implement multiple interfacesHttp://www.vckbase.com/document/viewdoc? Id = 1501Author: Instructor YangDownload source codeI. PrefaceFrom the fifth round to the seventh round, we useATL writes a simple COM component, which is simple because only one custom (IFM) interface ifun is implemented in the component. Of course, if you want to be lazy, we can add all 200 functions to this

[Reprinted] good user interface-some tips on interface design, reprinted Interface Design

[Reprinted] good user interface-some tips on interface design, reprinted Interface Design I can't remember when I found such a useful article, but I wanted to translate it and share it with myself. After a long time, in 2014, I finally calmed down and spent a lot of time translating the image into Chinese. I am a programmer who can only pass the cet6 score in my

Secure interface interface--Display implementation interface

Objective:When we define the members of an interface, we do not need to write the access control, because it is the default public and can only be public. When a class is to implement this interface, it is natural to expose its members. I've been doing this for a long time.Interface Interface1 { string GetName (string name); }Class Class1:interface1 {public string GetName (string name

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