VMD is the visual molecular http://www.aliyun.com/zixun/aggregation/4979.html ">dynamics abbreviation, is a biological system of visual analysis tools, such as protein, nucleic acid, Lipid Double-layer components. VMD can be used to view generic molecules, read standard protein database (PDB) files, and display the included structure.
VMD provides a variety of methods for rendering and coloring molecules, including simple dots and lines, cpk spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon painting and others. VMD can be used for animation and analysis of Molecular Dynamics (MD) Simulations of trajectories that, in exceptional cases, can serve as an external MD scheme as a graphical front-end display and a remote computer to simulate animated molecules that use large structures for high-performance rendering of OpenGL and OpenGL programmable coloring languages.
VMD 1.9.1 This version adds a new "quicksurf" molecule surface that allows the molecular dynamics trajectory to be animated. Running a new graphical interface allows the results from Propka to be displayed in VMD interactions. Contains a new Android phone/flat-panel remote control. Many other new and updated plug-ins are described on VMD's home page.
Source Code LINUX OpenGL, CUDA (Linux (32-bit, RHEL4 or later) with CUDA) linux_64 OpenGL, CUDA (Linux (64-bit INTEL/AMD x86) With CUDA) OS X OpenGL, CUDA (32-bit Intel x86) (Apple macos-x 10.5.x or later with CUDA) OS X OpenGL (32-bit Intel x86) (APPL E macos-x 10.5.x or later) OS X OpenGL (PowerPC) (Apple macos-x 10.4.7 or later) solarisx86_64 OpenGL (Sun Solaris (64-bit x86) with OpenGL-Windows OpenGL, CUDA (Windows XP/VISTA/7 (32-bit) with OpenGL and CUDA) Windows OpenGL (Microsoft Windows xp/ VISTA/7 (32-bit) using OpenGL) unofficial (unsupported) VMD builds (experimental builds for OS X)
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