Matrix decomposition (rank decomposition) Article code summary
Matrix decomposition (rank decomposition)
This paper collects almost all the algorithms and applications of existing matrix decomposition, the original link: https://sites.google.com/site/igorcarron2/matrixfactorizations
Matrix Decompositions has A long history and generally centers around a set of known factorizations such as LU, QR , SVD and Eigendecompositions. More recent Factorizations has seen the light of the day with work started with the advent of NMF, K-means and Relat Ed Algorithm [1]. However, with the advent of new methods based on random projections and convex optimization that started in part in THE&NB Sp;compressive Sensing literature, we is seeing another surge of very diverse algorithms dedicated to many different kind s Of matrix factorizations with new constraints based on rank and/or positivity and/or sparsity,... As a result of this large increase in interest, I has decided to keep a list of them here following the success of THE&NB Sp;big picture in compressive sensing.
The sources for this list include the following most excellent sites: stephen Becker ' s Page, raghunanda N H. Keshavan ' S page, nuclear Norm and Matrix recovery through SDP by christoph helmberg, Arvind Ganesh ' S low-rank Matrix Recovery and completion via convex optimization who provide more in-depth additi Onal information. additional codes were featured also On nuit Blanche. The following people provided additional Inputs: olivier Grisel, matthieu puigt.
Most of the algorithms listed below generally rely on using the nuclear norm as a proxies to the rank functional. it May is not optimal. currently, cvx ( michael grant and stephen boyd) consistently allows one to explore Other proxies for the rank functional such as The log-det as found By maryam fazell, haitham Hin Di, stephen boyd. ** is used to show that the algorithm uses another heuristic than the nuclear norm.
In terms of notations, a refers to a matrix, L-refers to a low rank matrix, S-a sparse one and N to a noisy one. This page lists the different codes that implement the following matrix Factorizations:matrix completion, robust PCA, No Isy robust PCA, Sparse PCA, NMF, Dictionary Learning, MMV, randomized algorithms and other factorizations. Some of these toolboxes can sometimes implement several of these decompositions and is listed accordingly. Before I list algorithm here, I generally feature them on Nuit Blanche under the MF tag:http://nuit-blanche.blogspot.com/ SEARCH/LABEL/MF or. can also subscribe to the Nuit Blanche feed,
Matrix completion, A = H.*l with H A known mask, l unknown solve for L lowest rank possible
The idea of this approach are to complete the unknown coefficients of a matrix based on the fact that the matrix was low ran K:
- Optspace:matrix completion from a Few Entries by Raghunandan H. Keshavan, Andrea Montanari, and Sewoong Oh
- Lmafit:low-rank Matrix Fitting
- * * Penalty decomposition Methods for Rank minimization by Zhaosong LUs and Yong zhang.the attendant MATLAB code is here.
- Jellyfish:parallel Stochastic Gradient algorithms for large-scale Matrix completion, B. Recht, C. Re, APR 2011
- Grouse:online identification and Tracking of subspaces from highly incomplete information, L. Balzano, R. Nowak, B. Recht , 2010
- Svp:guaranteed Rank minimization via Singular Value Projection, R. Meka, P. Jain, I.s.dhillon, 2009
- SET:SET:an algorithm for consistent matrix completion, W. Dai, O. Milenkovic, 2009
- Nnls:an accelerated proximal gradient algorithm for nuclear norm regularized least squares problems, K. Toh, S. Yun, 2009
- Fpca:fixed Point and Bregman iterative methods for matrix rank minimization, S. Ma, D. Goldfard, L. Chen, 2009
- Svt:a singular value thresholding algorithm for matrix completion, J-f Cai, E.J. Candes, Z. Shen, 2008
Noisy robust PCA, A = l + S + N with L, S, n unknown, solve in L low rank, S sparse, N noise
- Godec:randomized Low-rank and Sparse Matrix decomposition in Noisy case
- Reprocs:the Recursive Projected compressive sensing code (example)
Robust PCA:A = L + S with L, S, N unknown, solve in L low rank, s sparse
- Robust Pca:two Codes that go with the paper "Both proposals for robust PCA Using semidefinite programming." By Michalei M Ccoy and Joel Tropp
- Spams (SPArse Modeling Software)
- Admm:alternating Direction Method of multipliers ' Fast Automatic Background Extraction via robust PCA ' by Ivan Papusha. The poster is here. The MATLAB implementation is here.
- pcp:generalized Principal Component Pursuit
- Augmented Lagrange Multiplier (ALM) Method [exact alm–matlab zip] [inexact alm–matlabzip], reference-the augmented L Agrange Multiplier Method for Exact Recovery of corrupted Low-rank matrices, Z. Lin, M. Chen, L. Wu, and Y. Ma (UIUC Techn ical report uilu-eng-09-2215, November 2009)
- Accelerated proximal Gradient, reference-fast convex optimization algorithms for Exact Recovery of a corrupted Low-rank Matrix, Z. Lin, A. Ganesh, J. Wright, L. Wu, M. Chen, and Y. Ma (UIUC Technical report uilu-eng-09-2214, August) [ful L SVD version–matlab zip] [partial SVD version–matlab zip]
- Dual Method [MATLAB zip], reference-fast convex optimization algorithms for Exact Recovery of a corrupted Low-rank Matri X, Z. Lin, A. Ganesh, J. Wright, L. Wu, M. Chen, and Y. Ma (UIUC Technical report uilu-eng-09-2214, August 2009).
- Singular Value thresholding [MATLAB zip]. Reference-a Singular Value thresholding Algorithm for Matrix completion, J. F. Cai, E. Candès, and Z. Shen (2008).
- Alternating Direction Method [MATLAB zip], reference-sparse and Low-rank Matrix decomposition via alternating Direction Methods, X. Yuan, and J. Yang (2009).
- Lmafit:low-rank Matrix Fitting
- Bayesian Robust PCA
- Compressive-projection PCA (CPPCA)
Sparse pca:a = DX with unknown D and X, solve for Sparse D
Sparse PCA on Wikipedia
- R. Jenatton, G. Obozinski, F. Bach. Structured Sparse Principal Component analysis. International Conference on Artificial Intelligence and Statistics (aistats). [PDF] [Code]
- Spams
- Dspca:sparse PCA using SDP. Code is here.
- PATHPCA:A fast greedy algorithm for Sparse PCA. The code is here.
Dictionary learning:a = DX with unknown D and X, solve for sparse X
Some implementation of Dictionary learning implement the NMF
- Online Learning for Matrix factorization and Sparse Coding by Julien mairal, Francis Bach, Jean ponce,guillermo Sapiro [Th E code is released as SPArse Modeling software or spams]
- Dictionary Learning algorithms for Sparse representation (Matlab implementation of Focuss/focuss-cndl are here)
- Multiscale sparse image representation with learned dictionaries [Matlab implementation of the K-SVD algorithm are here, a Newer implementation by Ron Rubinstein are here]
- Efficient sparse coding algorithms [Matlab code is here]
- Shift invariant Sparse Coding of Image and Music Data. Matlab Implemention is here
- Shift-invariant Dictionary Learning for sparse representations:extending K-SVD.
- thresholded smoothed-l0 (SL0) Dictionary Learning for Sparse representations by Hadi Zayyani, Massoud Babaie-zadeh and Rem I gribonval.
- Non-negative Sparse Modeling of Textures (NMF) [Matlab Implementation of NMF (Non-negative Matrix factorization) and NTF ( Non-negative Tensor), a faster implementation of NMF can be found here, here are a more recent non-negative Tensor Factoriz Ations Package]
Nmf:a = DX with unknown D and X, solve for elements of d,x > 0
Non-negative Matrix Factorization (NMF) on Wikipedia
- hals:accelerated multiplicative Updates and hierarchical ALS algorithms for nonnegative Matrix factorization by Nicolas G Illis, François glineur.
- Spams (SPArse Modeling software) by Julien Mairal, Francis Bach, Jean Ponce,guillermo Sapiro
- Nmf:c.-j. Lin. Projected gradient methods for non-negative matrix factorization. Neural Computation, 19 (2007), 2756-2779.
- Non-negative Matrix Factorization:this page contains an optimized C implementation of the non-negative matrix Factorizati On (NMF) algorithm, described in [Lee & Seung 2001]. We implement the update rules that minimize a weighted SSD error metric. A detailed description of weighted NMF can be found In[peers et al. 2006].
- Ntflab for Signal processing, toolboxes for NMF (non-negative Matrix factorization) and NTF (non-negative Tensor Factoriza tion) for BSS (Blind Source separation)
- Non-negative Sparse Modeling of Textures (NMF) [Matlab Implementation of NMF (Non-negative Matrix factorization) and NTF ( Non-negative Tensor), a faster implementation of NMF can be found here, here are a more recent non-negative Tensor Factoriz Ations Package]
Multiple measurement Vector (MMV) Y = A x with unknown X and rows of x is sparse.
- T-MSBL/T-SBL by Zhilin Zhang
- Compressive MUSIC with optimized partial support for joint sparse recovery by Jong Min Kim, Ok kyun Lee, Jong Chul Ye [No Code
- The Rembo algorithm accelerated Recovery of jointly Sparse Vectors by Moshe Mishali and Yonina C. Eldar [No Code]
Blind Source Separation (BSS) Y = A x with unknown A and X and statistical independence between columns of X or subspaces of columns of X
Include Independent Component Analysis (ICA), independent subspace Analysis (ISA), and Sparse Component analysis (SCA). There is many available codes for ICA and some for SCA. Here is a non-exhaustive list of some famous ones (which be not limited to linear instantaneous mixtures). Tbc
Ica:
- icalab:http://www.bsp.brain.riken.jp/icalab/
- BLISS softwares:http://www.lis.inpg.fr/pages_perso/bliss/deliverables/d20.html
- Misep:http://www.lx.it.pt/~lbalmeida/ica/mitoolbox.html
- Parra and Spence ' s frequency-domain convolutive Ica:http://people.kyb.tuebingen.mpg.de/harmeling/code/convbss-0.1.tar
- C-fica:http://www.ast.obs-mip.fr/c-fica
Sca:
- Duet:http://sparse.ucd.ie/publications/rickard07duet.pdf (the MATLAB code is given at the end of this PDF document)
- Li-tifrom:http://www.ast.obs-mip.fr/li-tifrom
Randomized algorithms
These algorithms uses generally random projections to shrink very large problems into smaller ones that can is amenable to Traditional matrix factorization methods.
Resource
Randomized algorithms for matrices and data by Michael W. Mahoney
Randomized algorithms for Low-rank Matrix decomposition
- Randomized PCA
- Randomized Least Squares:blendenpik (http://pdos.csail.mit.edu/~petar/papers/blendenpik-v1.pdf)
Other factorization
D (T (.)) = L + E with unknown L, E and unknown transformation T and solve for transformation T, low Rank L and Noise E
- Rasl:robust Batch Alignment of Images by Sparse and Low-rank decomposition
- Tilt:transform Invariant Low-rank Textures
Frameworks featuring Advanced Matrix factorizations
For the time being, few has integrated the most recent factorizations.
- Scikit Learn (Python)
- Matlab Toolbox for dimensionality Reduction (probabilistic PCA, Factor analysis (FA) ...)
- Orange (Python)
- Pcamethods-a Bioconductor Package providing PCA methods for incomplete data. R Language
Graphlab/hadoop
- Danny Bickson keeps a blog on Graphlab.
Books
- Matrix factorizations on Amazon.
Example of Use
- Cs:low Rank compressive spectral Imaging and a multishot Cassi
- Cs:heuristics for Rank proxies and how it changes everything ....
- Tennis Players is Sparse!
Sources
Arvind Ganesh ' s Low-rank Matrix Recovery and completion via convex optimization
- Raghunandan H. Keshavan ' s list
- Stephen Becker ' s list
- Nuclear Norm and Matrix Recovery through SDP by Christoph Helmberg
- Nuit Blanche
Relevant links
- Welcome to the Matrix factorization Jungle
- Finding Structure with randomness
Reference:
A uni?ed View of the Matrix factorization Models by Ajit p. Singh and Geoffrey J. Gordon
Matrix decomposition (rank decomposition) Article code summary
